Publications (2009-2004)

Friedel M; Nikolajewa S; Sühnel J; and Wilhelm T.: DiProGB: The Dinucleotide Properties Genome Browser. Bioinformatics, 2009 accepted.

Sinha, R; Nikolajewa, S; Szafranski, K; Hiller, M; Jahn, N; Huse, K; Platzer, M; Backofen, R. Accurate prediction of NAGNAG alternative splicing. Nucleic Acids Res. 37(11), 3569-3579. (2009). PubMed PMID: 19359358

Friedel, M; Nikolajewa, S; Sühnel, J; Wilhelm, T. DiProDB: a database for dinucleotide properties. Nucleic Acids Res. 37, D37-40 (2009). PubMed PMID: 18805906.
Friedel, M; Nikolajewa, S; Wilhelm, T. The Decomposition Tree for analyses of Boolean functions. Mathematical Structures in Computer Science. 18, 411-426 (2008). Full text

Hiller, M; Szafranski, K; Sinha, R; Huse, K; Nikolajewa, S; Rosenstiel, P; Schreiber, S; Backofen, R; Platzer, M. Assessing the fraction of short-distance tandem splice sites under purifying selection. RNA. 14, 616-29 (2008).

Nikolajewa, S; Pudimat, R; Hiller, M; Platzer, M; Backofen, R. BioBayesNet: a web server for feature extraction and Bayesian network modeling of biological sequence data. Nucleic Acids Res. 35, W688-93 (2007).

Nikolajewa, S; Friedel, M; Wilhelm, T. Boolean networks with biologically relevant rules show ordered behavior. Biosystems. 90, 40-7 (2007).Full text

Hiller, M; Nikolajewa, S; Huse, K; Szafranski, K; Rosenstiel, P; Schuster, S; Backofen, R; Platzer, M. TassDB: a database of alternative tandem splice sites. Nucleic Acids Res. 35, D188-92 (2007).
Nikolajewa, S; Friedel, M; Beyer, A; Wilhelm, T. The new classification scheme of the genetic code, its early evolution, and tRNA usage. J Bioinform Comput Biol. 4, 609-20 (2006). Full text

Nikolajewa, S; Beyer, A; Friedel, M; Hollunder, J; Wilhelm, T. Common patterns in type II restriction enzyme binding sites. Nucleic Acids Res. 33, 2726-33 (2005).

Wilhelm, T; Nikolajewa, S. A new classification scheme of the genetic code. J Mol Evol. 59, 598-605 (2004). Full text

Wilhelm,T and Nikolajewa, S. (2004) A purine-pyrimidine classification scheme of the genetic code. BIOforum Europe vol.06 pp. 46-49. (Poster presentation in ICSB 04 was be accepted as the paper by the Journal BIOforum Europe)Full text

Book contributions
Zemlianuhina, LN and Nikolajewa SL (2000). Modeling of competition and rivarly between two corporations producing the same product.In: Computer Modeling: Economics, Vuzovskaia kniga, Moskow, pp. 69-84.ISBN: 5-89522-115-7

PhD thesis
Nikolajewa SL (2006). Identification and Analysis of Patterns in DNA sequences, the Genetic Code and Transcriptional Gene Regulation